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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
ACC rs6102175 chr20:39462014 G/A GAGE2D chrX:49207160-49214420:+ 0.8 7.93 1.65E-10 Box Plot
ACC rs61357865 chr6:119274807 CAA/C ACTR3C chr7:149941005-150020814:- 1.01 7.8 2.6E-10 Box Plot
ACC rs61482161 chr10:58536584 G/GAA GPR128 chr3:100328433-100414323:+ 0.85 7.72 3.56E-10 Box Plot
ACC rs61613299 chr11:6476461 C/T PRHOXNB chr13:28552243-28562774:- 0.72 10.73 8.63E-15 Box Plot
ACC rs61813832 chr1:156882950 C/T PRHOXNB chr13:28552243-28562774:- 0.56 8.39 3.08E-11 Box Plot
ACC rs62015197 chr15:52340766 A/G PRHOXNB chr13:28552243-28562774:- 0.67 9 3.49E-12 Box Plot
ACC rs62163295 chr2:111782545 C/T GAGE2D chrX:49207160-49214420:+ 0.78 7.67 4.21E-10 Box Plot
ACC rs62163295 chr2:111782545 C/T TFDP3 chrX:132350697-132352376:- 1.23 10.85 5.83E-15 Box Plot
ACC rs62187476 chr2:236050652 G/A GAGE2D chrX:49207160-49214420:+ 0.7 8.59 1.49E-11 Box Plot
ACC rs62207740 chr20:48334698 A/C PLA2G4F chr15:42431232-42448834:- 0.94 7.53 6.98E-10 Box Plot
ACC rs62272169 chr3:159990642 A/C KRT6C chr12:52862300-52867569:- 0.88 7.83 2.4E-10 Box Plot
ACC rs62444986 chr6:86448545 G/T DDX53 chrX:23018078-23021706:+ 0.72 7.87 2.02E-10 Box Plot
ACC rs62444988 chr6:86460586 G/C DDX53 chrX:23018078-23021706:+ 0.72 7.87 2.02E-10 Box Plot
ACC rs62585304 chr9:130714384 G/A PRAMEF16 chr1:13495254-13498260:+ 0.53 7.57 6.16E-10 Box Plot
ACC rs62585312 chr9:130723419 C/G PRAMEF16 chr1:13495254-13498260:+ 0.53 7.59 5.62E-10 Box Plot